Coral Reef Diagnostics

Kenya - Uyombo (Watamu) snorkel

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05
Photo: Anderson Mayfield/Coral Reef Diagnostics
Country
Survey date(s)
2024-03-28
Coordinates
-3.4030, 39.9759
Coral cover
25%
Manual point count (375 photos) · other methods below
Coral bleached
82%
of hard coral tissue · Mayfield (2025), Environments 12:276
Observations
Heat stress
Most recent heat load record
26 Oct 2026 · No heat stress
5-year thermal stress load
5-year mean max. degree heating weeks (DHW)
2021–2025
NOAA Coral Reef Watch — Kenya virtual station
i 5-year mean max. DHW is the mean of the annual maximum DHWs over the five complete years named above, not conditions today.
More infoKenya (NOAA CRW virtual station)
Photographs
377
50 shown on this page
Site summary
Read this summary in:

Uyombo, surveyed across sixteen quadrats on a shallow reef flat, is a genuine mosaic of habitats — dense staghorn thickets, boulder ground, brain-coral beds, and seagrass — with heavy bleaching throughout (82% of tissue) that hit massive corals just as hard as the branching Acropora, overturning any idea that boulders were the safe group. A distinctive pink-to-mauve stress coloration recurred across eleven of the sixteen quadrats, often alongside both fully brown and fully white colonies in the same frame. Published cover was 25%.

Water temp. during survey
32.3°C
(estimated from the TG7 underwater camera, not validated (Mayfield 2025, Environments 12:276, Table 1))

Three independent survey stations shown with the program’s logo — click one to see how far it is from this site.

Two other CRD dive sites with their own pages within 5 km shown in orange — click a marker to open its page.

4 of the 50 photographs on this page are shown beside the text that discusses them under "Site description" below.

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Photo credit & attribution

Site description

General benthic features

The quadrats that open and close the survey are the thinnest. Frame codes such as UYQ1-1 cite photographs on file; the gallery shows only 50 frames, and the rest are photos not shown. UYQ1 (10:22-10:28) is low-relief rubble and pavement carpeted in red-brown turf and green Halimeda-type clumps, with coral present only as scattered colonies against the transect pipe: a bone-white branching Acropora (UYQ1-1, UYQ1-2, UYQ1-3), a meter-scale knobby Porites-type dome bleached uniformly porcelain-white (UYQ1-12), a white encrusting sheet against the pipe (UYQ1-7), and against those a handful of colonies still carrying pigment — a tan meandroid brain (UYQ1-14), a mustard-brown faviid (UYQ1-4), a salmon-cream massive Porites (UYQ1-13). UYQ15 (12:27-12:30) is the poorest ground in the set, only nine frames, and every one of them is dominated by a brown fleshy macroalgal canopy over rock with seagrass behind; the corals in it are isolated pale lobes swamped by algae (UYQ15-5, UYQ15-6, UYQ15-7, UYQ15-9), and the two quadrat-frame shots (UYQ15-1, UYQ15-2) enclose almost no coral at all. UYQ16 (12:18-12:23) is similar back-reef algal ground, but with small Pocillopora and Stylophora-type colonies scattered through it, several of them a striking pink-to-mauve (UYQ16-4, UYQ16-5, UYQ16-7, UYQ16-8, UYQ16-9), one mustard-yellow encrusting colony holding full pigment (UYQ16-13), and one white meandroid brain beside a still-tan Porites (UYQ16-19). Three quadrats carry most of the site's structure and most of its survivors. UYQ6 (10:58-11:05) is dense ground in the photographs, large corymbose and tabular Acropora in salmon, tan, and pink with blue-green chromis streaming through them (UYQ6-4, UYQ6-5, UYQ6-6, UYQ6-8, UYQ6-12), and it is also where partial mortality is clearest: a massive Porites partly bleached, white over its upper two-thirds with brown tissue remnants, carrying algae-filled bioerosion holes (UYQ6-15), a large white columnar colony (UYQ6-23), and a white Acropora sitting directly against a dark-brown meandroid brain that has held its pigment completely (UYQ6-22). UYQ10 (11:33-11:37) is plate-and-boulder ground: broad foliose plates dominate, most of them white (UYQ10-13, UYQ10-14, UYQ10-17), but the single largest plate in the set is olive-tan and fully pigmented (UYQ10-3). UYQ14 (11:56-12:15, 49 frames) is the transition zone and the most varied quadrat of all. It runs from reef onto seagrass, and the seagrass frames are unambiguous (UYQ14-33, UYQ14-35, UYQ14-36, UYQ14-47), including one lilac-pink Acropora sitting alone in a seagrass bed (UYQ14-47).

Coral cover

Stressors

The branching-coral quadrats are where the bleaching is most complete. UYQ8 (11:18-11:25) is a dense staghorn and corymbose Acropora thicket, and it is essentially uniformly bleached: frame after frame of white-to-palest-pink branch stands filling the quadrat (UYQ8-3, UYQ8-4, UYQ8-13, UYQ8-14, UYQ8-22, UYQ8-23, UYQ8-24, UYQ8-25, UYQ8-26, UYQ8-27, UYQ8-28, UYQ8-29). UYQ13 (11:47-11:55) is the same story in tabular form — white tables and corymbose heads standing over a green algal carpet (UYQ13-2, UYQ13-3, UYQ13-4, UYQ13-7, UYQ13-10, UYQ13-12, UYQ13-14) — with only one clearly pigmented tan Acropora table left in it (UYQ13-8), blue damselfish hanging over it. UYQ5 (10:52-10:57) holds two large tables, one pale cream throughout (UYQ5-1) and one split tan-and-white across a single colony (UYQ5-15), plus corymbose heads in pink and mauve-white (UYQ5-4, UYQ5-5, UYQ5-8, UYQ5-9, UYQ5-11). UYQ12 (11:43-11:47) is tabular ground too, but with more survivors: two large tables gone white with lilac rims (UYQ12-10, UYQ12-13) sit beside gold-brown corymbose Acropora and chocolate-brown faviid domes still fully pigmented (UYQ12-3, UYQ12-4, UYQ12-5, UYQ12-6). The boulder and brain quadrats overturn the idea that the massive corals were the safe group here. UYQ2 (10:26-10:36) is macroalgae-heavy ground — brown Sargassum and Padina-type canopy through UYQ2-2, UYQ2-10, UYQ2-14, UYQ2-19 — studded with large massive colonies, and the massives in it are completely bleached: two meter-scale porcelain-white Porites-type domes (UYQ2-17, UYQ2-25), a third white dome with turf-filled grooves between its lobes (UYQ2-13), and white meandroid and faviid colonies at UYQ2-5, UYQ2-7, and UYQ2-8 (e.g., Image 3).

UYQ3 (10:36-10:43) adds a textbook fully white meandroid brain (UYQ3-20) and a white massive bommie (UYQ3-18) alongside long pale digitate Acropora ridges (UYQ3-21, UYQ3-22), but also the survivors: gold-brown corymbose Acropora immediately beside white ones (UYQ3-4, UYQ3-5, UYQ3-7) and tan faviids and Astreopora-type colonies (UYQ3-8, UYQ3-9, UYQ3-13). UYQ4 (10:44-10:51) is a Porites boulder field where the boulders have gone pale and chalky rather than staying brown (UYQ4-1, UYQ4-2, UYQ4-3, UYQ4-27, UYQ4-28), including one large white lobate colony with a single dark red remnant patch (UYQ4-29); its pigmented holdouts are branching, not massive — two close-ups of gold-orange Acropora with normal color (UYQ4-25, UYQ4-26) and a mustard-yellow encrusting plate (UYQ4-14) (e.g., Image 2).

UYQ9 (11:25-11:32) is brain coral ground, and every large meandroid colony in it is pale gray-white (UYQ9-6, UYQ9-9, UYQ9-19, UYQ9-21, UYQ9-22); free-living Fungia mushroom corals in the same quadrat are white too (UYQ9-18, UYQ9-20), with a single tan one retaining a pink mouth (UYQ9-17) (e.g., Image 4).

The exceptions in UYQ9 are again branching: a fully gold-green Acropora (UYQ9-12) and a strongly orange-brown corymbose colony (UYQ9-24). UYQ11 (11:38-11:43) is the healthy-versus-bleached quadrat — four hand-in-frame close-ups deliberately place a gold or tan Acropora against a snow-white one on the same patch of reef (UYQ11-4, UYQ11-5, UYQ11-6, UYQ11-8), and UYQ11-15 catches the split within a single corymbose colony, half brown and half white. UYQ14's massive Porites bommies are pale to white almost without exception (UYQ14-10, UYQ14-28, UYQ14-34, UYQ14-37, UYQ14-38, UYQ14-40, UYQ14-41, UYQ14-42, UYQ14-44, UYQ14-48), one broad stretch is flattened algal-covered pavement with no live coral left on it (UYQ14-23), and one wide frame holds more than a dozen bleached host anemones with damselfish among them (UYQ14-26, UYQ14-27). Set against that, UYQ14-17 is a fully tan-gold massive Porites in perfect condition, and the quadrat holds a strong color signal: vivid pink-red corymbose Acropora with brown remaining at the top (UYQ14-11), magenta-pink Pocillopora (UYQ14-2), and a mauve-pink corymbose head immediately beside a white one (UYQ14-30). That pink-to-mauve stress coloration is real and it is the site's signature, seen in eleven of the sixteen quadrats — but note that these are color-adjusted exports, so the intensity of the pinks should be treated as indicative rather than measured (e.g., Image 1).

What supports it as a genuine observation, rather than processing, is that the pink colonies often sit in the same frame as both fully brown and fully white colonies, so the contrast is internal to the image. No crown-of-thorns seastar appears in any of the 358 frames reviewed. Typical recent thermal stress: mean annual maximum of 4.9 degree heating weeks (2021-2025, NOAA CRW; Kenya virtual station). Seawater here was an estimated 32.3°C during the survey (read from the TG7 underwater camera and not validated, per Mayfield 2025, Environments 12:276, Table 1; the Kenya survey-wide mean of 32.0°C matched the 1998 event), and NOAA recorded a peak of 13.5 degree-heating weeks on 18 April 2024, the highest for Kenya since records began in 1985. For the 2024 Kenya survey as a whole, Mayfield (2025, Environments 12:276) estimated that in situ temperatures ran about 1.3°C above NOAA's, so that "nearly 22 DHWs may actually have transpired"; those in situ readings came from the TG7 underwater camera and have not been validated.

Fish and other fauna

Other fauna across the set: schooling blue-green chromis over the Acropora stands (UYQ4-30, UYQ6-6, UYQ6-8, UYQ13-13), a sergeant-major over the reef flat (UYQ14-49), damselfish over bleached tables (UYQ12-7), black long-spined urchins (UYQ1-16, UYQ2-9, UYQ11-16), an orange mushroom coral tucked among bleached Acropora branches (UYQ8-12), and extensive fleshy red and brown macroalgae across UYQ2, UYQ7, UYQ9, UYQ15, and UYQ16.

Comparisons with other data

Hereward et al. (2019) surveyed this site (Uyombo), 0.15 km from the pin. Cover values from that work are not among the survey records shown on this page. Within 5 km, three WCS Kenya via MERMAID stations recorded station-year means of 8.8–25% hard coral cover between 2014 and 2022, all with MERMAID bleaching-protocol quadrats; the nearest of these, WCS Kenya via MERMAID (quadrats) at Watamu, 2.75 km away, read a mean of 25% in 2016.

Dive record

Snorkeled 28 Mar 2024 over the Uyombo reef flat south of Watamu, during the 2024 Western Indian Ocean mass bleaching event. The survey was run as sixteen quadrats (UYQ1-UYQ16) worked between 10:22 and 12:30, and the 358 reviewed frames (of 377 on file) show that Uyombo is not one reef but a mosaic: algal-turfed pavement, dense Acropora thicket, boulder ground, brain coral ground, and seagrass all sit within the same shallow survey, and the bleaching signal reads differently in each. Surveys were run with A Rocha.

CV model comparison

Computer-vision estimates from this site's own photographs are listed in the comparison table below, alongside the headline rather than merged into it.
Headline is the reference value; every other row is listed beside it for comparison and none is averaged in. ⚠ The methods did not all read the same photographs: the published manual value covers the site's 375 photographs; CoralNet ran on 375 and the in-house DINOv3 classifier on 374 unedited photographs, Claude (blind) on all 374, and CoralSCOP on 24.
More infoOn the 374 frames Claude scored, with all 30 points in the denominator as in Claude's value, the manual count is 23%; that like-for-like figure, not the published value, is the fair comparison for Claude. ⚠ Claude's value counts all 30 points in the denominator, while the published manual value, CoralNet, and DINOv3 exclude water and fish points (the Mayfield 2025 convention), so Claude reads somewhat low on that basis alone. Round Reef and Uyombo roll up 15 and 16 quadrat codes respectively. CoralSCOP (SAM-based mask-sum), edited photos: n/a — CoralSCOP was run only on the unedited Kenya photographs.
MethodHard coral cover (%)Photos (n) ± SE
Manual (published)24.8
CoralNet24.5n = 375
In-house DINOv336.7n = 374
CoralSCOP unedited29.1n = 24
Claude23.0n = 374 · SE 1.0

The four computer-vision methods disagree by 13.7 pp (23.0–36.7%) and read on both sides of the manual point count (24.8%); the headline is the manual point count because a person's point count of the site's photographs is the reference the models are measured against.

Independent surveys nearby

Hard coral cover over time — this site and every independent station within 5 km. Programs are shown separately because they use different methods at different stations; the lines are not one comparable series.
0%10%20%30%201420192024WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2014: 20%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2016: 25%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2022: 8.8%Coral Reef Diagnostics 2024: 25%
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) Coral Reef Diagnostics

Within 5 km, 3 independent survey stations recorded hard coral cover in 4 surveys between 2014 and 2022. One survey since 2021 with MERMAID bleaching-protocol quadrats recorded 8.8%. This site's own estimate (25%) is not compared with these surveys: none lies within 2 km.

Collected by other programs using different methods (MERMAID is a data platform: each MERMAID row names the organization that did the survey, and its method is in the row's hover text), so these are context for the figures above, not a like-for-like comparison. Where a station was surveyed more than once, the cell shows either the range of its values or, as a single value, the mean of surveys made in one year. Station names are not dive-site names. MERMAID lists the 2016 Watamu survey at a rounded position (-3.37, 40.01), 5.27 km from this pin, so its record is placed at 2.75 km, the position the compilation source gives for the same survey.

Independent survey data near this site
AgencySite / locationDateHard coral cover (%)DistanceLink
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Watamu Tewa201420%4.56 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Watamu201625% (2 surveys)2.75 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Watamu20228.8%3.16 kmDarling E, Kosgei J, McClanahan T, Muthiga N, Oddenyo R. 2022. Kenya-Marine Monitoring_2022. MERMAID

Data & links

All images from Coral Reef Diagnostics. Data are from Coral Reef Diagnostics and the organizations named in the data sources above.

© Coral Reef Diagnostics.

References

  1. Mayfield AB (2025). A Citizen Science Approach for Documenting Mass Coral Bleaching in the Western Indian Ocean. Environments 12:276. PDF
  2. Hereward HF, Gentle LK, Ray ND, Sluka RD (2019). Habitat associations of hawkfish: Depth, distribution, and density at two sites in Kenya. Bulletin of Marine Science 95:265-276. DOI