Coral Reef Diagnostics

Kenya - MMP snorkel site (Mombasa) snorkel

⬇ Download this page as a report card
05
Photo: Anderson Mayfield/Coral Reef Diagnostics
Country
Survey date(s)
2024-03-14
Coordinates
-3.9984, 39.7453
Coral cover
40%
Manual point count (54 photos) · other methods below
Coral bleached
90%
of hard coral tissue · Mayfield (2025), Environments 12:276
Observations
bleachingalgal overgrowth
Heat stress
Most recent heat load record
26 Oct 2026 · No heat stress
5-year thermal stress load
5-year mean max. degree heating weeks (DHW)
2021–2025
NOAA Coral Reef Watch — Kenya virtual station
i 5-year mean max. DHW is the mean of the annual maximum DHWs over the five complete years named above, not conditions today.
More infoKenya (NOAA CRW virtual station)
Photographs
56
20 shown on this page
Site summary
Read this summary in:

This shallow Mombasa Marine Park snorkel site is a back-reef field of Porites bommies substantially draped in fleshy brown algae, and 90% of hard coral tissue was bleached, leaving whole frames of chalk-white and cream domes with only scattered pigmented holdouts, including a few strikingly unbleached deep-purple Acropora colonies. Published cover was 40%.

Water temp. during survey
32.5°C
(estimated from the TG7 underwater camera, not validated (Mayfield 2025, Environments 12:276, Table 1))

Nineteen independent survey stations shown with the program’s logo — click one to see how far it is from this site.

Two other CRD dive sites with their own pages within 5 km shown in orange — click a marker to open its page.

3 of the 20 photographs on this page are shown beside the text that discusses them under "Site description" below.

3567891011121314151617181920

Photo credit & attribution

Site description

Setting

Surface light, wave shimmer, and a snorkeler's fins at the surface appear in the wide frames, confirming very shallow water throughout; visibility is moderate, green-tinged, and plankton-laden, with the far bommies fading into haze.

General benthic features

The site is a shallow back-reef bommie field: coalescing knobby, lobate, and columnar mounds of Porites type, a meter or so of relief, separated by floors of coarse sand, rubble, and low pavement. Frame after frame is the same architecture — dome beside dome, sand between. Algae are a major part of this site. Roughly a third of the set shows a dense fleshy canopy, brown, rust-red, and olive, draping whole bommie flanks and crests and in places burying the substratum between colonies (the frame Anderson named algal-choked is representative, not exceptional) (e.g., Image 1).

In several frames the macroalgae are overgrowing coral colonies, overtopping a bommie with a corymbose colony at its base and draping a mound flank around bleached branching colonies. This is a defining feature of the site, not incidental turf. Massive and knobby Porites dominate overwhelmingly, in every size from cobble-scale lobes to domes two meters across, along with columnar and finger-form Porites. Tabular and corymbose Acropora recur throughout — a meter-wide table growing off a bommie flank, several dinner-plate corymbose colonies wedged between Porites lobes, and two large bushy, finely branched Acropora-type colonies standing free on sand. Digitate and columnar corals in pale lilac, small encrusting and plating colonies (Montipora type, one distinctly green), and a scatter of cerioid massives fill in. Branching coral is subordinate to Porites but it is genuinely present and structurally conspicuous. A pink encrusting sponge or coralline and a tan barrel-form sponge occupy interstitial rock; a red whip-like organism rises from an algae-covered mound.

Coral cover

Stressors

Bleaching is severe and site-wide, entirely consistent with the published 90%. Whole wide frames read as fields of chalk-white, cream, and wan mint domes with only occasional pigmented colonies among them (e.g., Image 4).

Because these frames are color-adjusted, the strongest evidence is not absolute color but within-frame contrast and structure: one cream Porites dome retains a single discrete brown pigment patch on an otherwise uniformly whitened surface; several frames set fully pigmented ochre, tan, and orange-brown colonies immediately beside stark white ones under the same exposure; and the bleached surfaces show skeletal corallite texture reading straight through the tissue. Two large bushy branching colonies are bleached to a uniform white-lilac from base to branch tip. The pattern is a colony-by-colony mosaic rather than a total whiteout. Fully pigmented holdouts recur across the set. At least four separate deep violet-purple corymbose Acropora colonies appear across the set, each sitting unbleached in an otherwise chalk-white Porites pavement — so the vivid purple colony is a recurring feature of this reef, not a one-off (e.g., Image 2).

Several large Porites domes hold full orange-brown or ochre pigment, and a fully pigmented tan tabular Acropora sheltering a cloud of black-and-white humbug damselfish appears in two separate frames. One frame is a close-up of a large pale, mottled tabular colony with two deep purple branching colonies at its edge, one partly hidden under the table (Anderson: purple branching corals, not crown-of-thorns). No crown-of-thorns appear anywhere in the set. The near-total whitening across the 52 reviewed frames (of 56 on file) is entirely consistent with that 90%. Typical recent thermal stress: mean annual maximum of 4.9 degree heating weeks (2021-2025, NOAA CRW; Kenya virtual station). Seawater here was an estimated 32.5°C during the survey (read from the TG7 underwater camera and not validated, per Mayfield 2025, Environments 12:276, Table 1; the Kenya survey-wide mean of 32.0°C matched the 1998 event), and NOAA recorded a peak of 13.5 degree-heating weeks on 18 April 2024, the highest for Kenya since records began in 1985. For the 2024 Kenya survey as a whole, Mayfield (2025, Environments 12:276) estimated that in situ temperatures ran about 1.3°C above NOAA's, so that "nearly 22 DHWs may actually have transpired"; those in situ readings came from the TG7 underwater camera and have not been validated.

Fish and other fauna

Sergeant majors are everywhere over the bleached mounds. Humbug damselfish in the pigmented Acropora tables, a blackspotted sweetlips along a bommie flank, a dark surgeonfish over the crest, a small orange wrasse in the bushy branching colonies, and two frames of a large school of yellow-striped, yellow-tailed fish (goatfish- or snapper-type) drifting over open sand off the reef edge.

Comparisons with other data

We found no other surveys at this site as of 2026. Within 5 km, nineteen independent stations recorded hard coral cover between 1994 and 2022: two by benthic survey, station-year means of 22–27%, and seventeen by MERMAID bleaching-protocol quadrats, station-year means of 8.0–54%; the nearest, WCS Kenya via MERMAID (quadrats) at Mombasa 3, 0.52 km away, read a mean of 15% in 2016.

Dive record

Snorkeled 14 Mar 2024 at 1-3 m inside Mombasa Marine Park, during the 2024 Western Indian Ocean mass bleaching event. Surveys were run with Tropical Diving Kenya.

Other notes

This account is based on 52 of the 56 frames on file.

CV model comparison

Computer-vision estimates from this site's own photographs are listed in the comparison table below, alongside the headline rather than merged into it.
Headline is the reference value; every other row is listed beside it for comparison and none is averaged in.
MethodHard coral cover (%)Photos (n) ± SE
Manual (published)39.6
CoralNet (published survey's own annotation)39.6n = 54
In-house DINOv354.2n = 54
CoralSCOP unedited23.3n = 41

The three computer-vision methods disagree by 30.9 pp (23.3–54.2%) and read on both sides of the manual point count (39.6%); the headline is the manual point count because a person's point count of the site's photographs is the reference the models are measured against.

Independent surveys nearby

Data availability near this site
Agency / programYear(s)Stations / distanceLink
Mangubhai et al. (2007)20031 station, 2.11 kmRecords ↓
McClanahan et al. (1996)19941 station, 3.90 kmRecords ↓
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)2009–202217 stations, 0.52–3.42 kmRecords ↓
Hard coral cover over time — this site and every independent station within 5 km. Programs are shown separately because they use different methods at different stations; the lines are not one comparable series.
0%15%30%45%60%199420092024McClanahan et al. (1996) 1994: 27%Mangubhai et al. (2007) 2003: 22%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2009: 8.0%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2009: 9.7%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2009: 12%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2009: 14%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2009: 14%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2009: 15%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2009: 21%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2009: 24%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2009: 33%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2010: 10%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2010: 11%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2010: 13%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2011: 11%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2011: 22%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2013: 20%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2016: 15%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2016: 18%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2016: 20%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2016: 22%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2016: 23%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2016: 23%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2016: 31%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2017: 21%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2017: 54%WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) 2022: 20%Coral Reef Diagnostics 2024: 40%Year-averaged across all programs: illustrative only; the programs differ in stations and method, so no trend is claimed (3 years)
McClanahan et al. (1996) Mangubhai et al. (2007) WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats) Coral Reef DiagnosticsYear-average (illustrative only, programs differ; quadrats left out)

Within 5 km, 19 independent survey stations recorded hard coral cover in 36 records between 1994 and 2022. Of the 4 stations surveyed in more than one year with MERMAID bleaching-protocol quadrats, 2 declined (by 10–12 points) and 2 increased (by 14–16 points) between their first and latest surveys. The longest record, Mombasa Coral Gardens (WCS Kenya via MERMAID, quadrats, 0.86 km away), went from 33% in 2009 to 21% in 2017. One survey since 2021 with quadrats recorded 20%. This site's own estimate (40%) sits 20 points above the recent value up to 2 km away with quadrats (20%); the methods differ, so the comparison is context, not a like-for-like test.

Collected by other programs using different methods (MERMAID is a data platform: each MERMAID row names the organization that did the survey, and its method is in the row's hover text), so these are context for the figures above, not a like-for-like comparison. Where a station was surveyed more than once, the cell shows either the range of its values or, as a single value, the mean of surveys made in one year. Station names are not dive-site names.

Show all 36 independent survey records
Independent survey data near this site
AgencySite / locationDateHard coral cover (%)DistanceLink
McClanahan et al. (1996)—199427%3.90 kmdoi:10.1046/j.1523-1739.1996.10010136.x
Mangubhai et al. (2007)Coral Gardens200322%2.11 kmdoi:10.3354/meps07090
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Mombasa Starfish200924%0.86 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Mombasa Coral Gardens2009–201713–33% (range of yearly means; 6 surveys)0.86 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Kasa_Mombasa2009–201011–21% (range of yearly means; 4 surveys)1.68 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Mombasa Mushroom2009–201615–31% (2 surveys)2.29 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)RasIwatine2009–20168.0–22% (3 surveys)2.92 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)RasIwatine 2200912%2.92 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Mombasa Braincoral200914% (3 surveys)3.07 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Taa200914%3.10 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Shark Point 220099.7% (3 surveys)3.42 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Bamburi Wreck201010%0.94 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Mombasa201320%0.86 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Mombasa 3201615% (14–15%, 2 surveys, Apr–May 2016)0.52 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Mombasa 2201618% (15–20%, 2 surveys, Apr–May 2016)0.54 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Mombasa Coral Gardens 3201623%0.86 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Mombasa Coral Gardens 2201623%0.86 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Mombasa Green turtle201754%1.68 kmDarling E. 2018. Kenya CRCP legacy. MERMAID
WCS Kenya via MERMAID (MERMAID bleaching-protocol quadrats)Mombasa202220%1.07 kmDarling E, Kosgei J, McClanahan T, Muthiga N, Oddenyo R. 2022. Kenya-Marine Monitoring_2022. MERMAID

Data & links

All images from Coral Reef Diagnostics. Data are from Coral Reef Diagnostics and the organizations named in the data sources above.

© Coral Reef Diagnostics.

References

  1. Mayfield AB (2025). A Citizen Science Approach for Documenting Mass Coral Bleaching in the Western Indian Ocean. Environments 12:276. PDF
  2. McClanahan TR, Kamukuru AT, Muthiga NA, Yebio MG, Obura D (1996). Effect of Sea Urchin Reductions on Algae, Coral, and Fish Populations. Conservation Biology 10:136-154. DOI
  3. Mangubhai S, Harrison P, Obura D (2007). Patterns of coral larval settlement on lagoon reefs in the Mombasa Marine National Park and Reserve, Kenya. Marine Ecology Progress Series 348:149-159. PDF